Nilearn

Viewing 3D MR brain image

Correlation matrix on a glass brain

Regions as markers on a glass brain

FSLEyes - Harvard Oxford Atlas

fsleyes /usr/local/fsl/data/atlases/HarvardOxford/HarvardOxford-cort-maxprob-thr25-2mm.nii.gz

MRtrix3 - Tractogram visualization

mrview dwi_den_preproc_unbiased.mif -tractography.load smallerTracks_200k.tck

MRI basics